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Single Cell omics at your fingertips
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Data structure
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3
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Data analysis
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CellRanger
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R pipeline
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Data deliverables
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BD WTA
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Experimental
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Service portfolio
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Where can I find my data?
Data deliverables
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related questions
How can I download my data from the share via command line?
How long will my data be stored?
How are the FASTQ files structured?
last updated: 28 Mar 2024
How can I download my data from the share via command line?
Data deliverables
View on detail page
related questions
Where can I find my data?
How long will my data be stored?
last updated: 28 Nov 2024
How are the FASTQ files structured?
Data deliverables
Data structure
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related questions
Where can I find my data?
How is CellRanger output structured?
How deep should my data be sequenced?
last updated: 7 May 2024
How is CellRanger output structured?
CellRanger
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related questions
How to intepret a CellRanger quality report?
How are the FASTQ files structured?
What processing steps are performed in the R processing pipeline with Seurat?
How to load my data after processing (10X)?
last updated: 27 Mar 2024
How long will my data be stored?
Data deliverables
View on detail page
related questions
How can I download my data from the share via command line?
Where can I find my data?
last updated: 27 Mar 2024
How deep should my data be sequenced?
Data analysis
Data structure
View on detail page
related questions
How are the FASTQ files structured?
What are the key metrics to look at in a CellRanger quality report?
last updated: 11 Jun 2025
Which services are provided by the VIB Single Cell Core?
Service portfolio
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last updated: 27 Mar 2024
How to intepret a CellRanger quality report?
CellRanger
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related questions
How to interpret a barcode rank plot?
How to load my data after processing (10X)?
What are the key metrics to look at in a CellRanger quality report?
Why do I have the warning 'Low Fraction Valid Barcodes' in the CellRanger quality report?
How is CellRanger output structured?
last updated: 11 Jun 2025
What are the key metrics to look at in a CellRanger quality report?
CellRanger
View on detail page
related questions
How to intepret a CellRanger quality report?
How deep should my data be sequenced?
Why do I have the warning 'Low Fraction Valid Barcodes' in the CellRanger quality report?
last updated: 3 Nov 2025
How to interpret a barcode rank plot?
CellRanger
View on detail page
related questions
How to intepret a CellRanger quality report?
last updated: 28 Mar 2024
How to load my data after processing (10X)?
Data analysis
View on detail page
related questions
How to intepret a CellRanger quality report?
How is CellRanger output structured?
last updated: 27 Mar 2024
How to intepret a BD WTA quality report?
BD WTA
View on detail page
related questions
How is BD WTA output structured?
last updated: 11 Jun 2025
How to load my data after processing (BD)?
Data analysis
BD WTA
View on detail page
related questions
How is BD WTA output structured?
last updated: 27 Mar 2024
How is BD WTA output structured?
BD WTA
Data structure
View on detail page
related questions
How to intepret a BD WTA quality report?
How to load my data after processing (BD)?
What processing steps are performed in the R processing pipeline with Seurat?
last updated: 22 Aug 2025
How to load my data after R processing?
R pipeline
Data analysis
View on detail page
related questions
What processing steps are performed in the R processing pipeline with Seurat?
last updated: 23 May 2025
What processing steps are performed in the R processing pipeline with Seurat?
R pipeline
Data analysis
View on detail page
related questions
How is CellRanger output structured?
How to load my data after R processing?
How is BD WTA output structured?
last updated: 23 May 2025
Why is 'intron mode' used on my sample?
CellRanger
View on detail page
last updated: 19 Jun 2025
Which CITEseq antibodies are used for my sample?
Experimental
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last updated: 2 Apr 2024
Why do I have the warning 'Low Fraction Valid Barcodes' in the CellRanger quality report?
CellRanger
Data analysis
View on detail page
related questions
How to intepret a CellRanger quality report?
What are the key metrics to look at in a CellRanger quality report?
last updated: 3 Nov 2025
Good to know: total number of reads and the effect on mean reads per cell
CellRanger
View on detail page
last updated: 19 Jun 2025